Framework for bacterial genome re-annotation and novel small proteins prediction [link] Analysis framework to explore essentiality from Tn-Seq [link] Codon optimization tool for tissue-specific gene design. [link]
Fast and quantitative estimation of interactions and stability between molecular species [link] Predict the helical behaviour of monomeric peptides [link] Algorithm to predict aggregation nucleating regions in proteins [link]
Databases
Mycoplasma pneumoniae functional database. Joined effort with Dpt. of General Microbiology, University of Göttingen (Germany) [link]
Courses
FoldX In silico protein engineering: From modeling to docking
I edition (2018) [link]
Tissue Engineering Course: From Stem Cells to Organoids
II edition (2018) [link]
I edition (2017) [link]
Whole-cell modeling
III edition, EMBO course (2019) [link]
II edition (2017) [link 1] [link2]
I edition (2016) [link 1] [link2]
Other Resources
Whole-cell model web of reference. By Jonathan Karr’s group at Mt. Sinai School of Medicine (US) [link] Collaborative Project for the establishment of a Systems Biology framework to understand key features of Mycobacterium tuberculosis [link]
