{"id":29,"date":"2018-04-12T15:04:04","date_gmt":"2018-04-12T15:04:04","guid":{"rendered":"http:\/\/serranolab.crg.eu\/?page_id=29"},"modified":"2021-07-12T04:01:40","modified_gmt":"2021-07-12T04:01:40","slug":"publications","status":"publish","type":"page","link":"http:\/\/serranolab.crg.eu\/index.php\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"<p><form class=\"impactpubs_years-ctls\" id=\"impactpubs_years-ctls\">\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2023\" id=\"impactpubs_years-ctl_2023\"\n\t\t\t\t\t checked  \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2023\"><a>2023<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2022\" id=\"impactpubs_years-ctl_2022\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2022\"><a>2022<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2021\" id=\"impactpubs_years-ctl_2021\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2021\"><a>2021<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2020\" id=\"impactpubs_years-ctl_2020\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2020\"><a>2020<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2019\" id=\"impactpubs_years-ctl_2019\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2019\"><a>2019<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2018\" id=\"impactpubs_years-ctl_2018\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2018\"><a>2018<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2017\" id=\"impactpubs_years-ctl_2017\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2017\"><a>2017<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2016\" id=\"impactpubs_years-ctl_2016\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2016\"><a>2016<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2015\" id=\"impactpubs_years-ctl_2015\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2015\"><a>2015<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2014\" id=\"impactpubs_years-ctl_2014\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2014\"><a>2014<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2013\" id=\"impactpubs_years-ctl_2013\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2013\"><a>2013<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2012\" id=\"impactpubs_years-ctl_2012\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2012\"><a>2012<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2011\" id=\"impactpubs_years-ctl_2011\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2011\"><a>2011<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2010\" id=\"impactpubs_years-ctl_2010\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2010\"><a>2010<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2009\" id=\"impactpubs_years-ctl_2009\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2009\"><a>2009<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2008\" id=\"impactpubs_years-ctl_2008\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2008\"><a>2008<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2006\" id=\"impactpubs_years-ctl_2006\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2006\"><a>2006<\/a><\/label>\n\n\t\t\t<\/form><p class=\"impactpubs_publication\" id=\"36829202\" data-year=\"2023\"><span class = \"ip-authors\"> Hernandez-Alias X; Benisty H; Radusky LG; Serrano L; Schaefer MH<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36829202\">Using protein-per-mRNA differences among human tissues in codon optimization.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Biol<\/span> <span class = \"ip-vol\">24(1):34<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"36537222\" data-year=\"2023\"><span class = \"ip-authors\"> Hernandez-Alias X; Katanski CD; Zhang W; Assari M; Watkins CP; Schaefer MH; Serrano L; Pan T<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36537222\">Single-read tRNA-seq analysis reveals coordination of tRNA modification and aminoacylation and fragmentation.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nucleic Acids Res<\/span> <span class = \"ip-vol\">51(3):e17<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"36658340\" data-year=\"2023\"><span class = \"ip-authors\"> Mazzolini R; Rodr\u00edguez-Arce I; Fern\u00e1ndez-Barat L; Pi\u00f1ero-Lambea C; Garrido V; Rebollada-Merino A; Motos A; Torres A; Grill\u00f3 MJ; Serrano L; Lluch-Senar M<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36658340\">Engineered live bacteria suppress Pseudomonas aeruginosa infection in mouse lung and dissolve endotracheal-tube biofilms.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Biotechnol<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"36598022\" data-year=\"2023\"><span class = \"ip-authors\"> Montero-Blay A; Blanco JD; Rodriguez-Arce I; Lastrucci C; Pi\u00f1ero-Lambea C; Lluch-Senar M; Serrano L<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36598022\">Bacterial expression of a designed single-chain IL-10 prevents severe lung inflammation.<\/a><\/span> &nbsp<span class = \"ip-journal\">Mol Syst Biol<\/span> <span class = \"ip-vol\">19(1):e11037<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36414642\" data-year=\"2022\"><span class = \"ip-authors\"> Zadra I; Jimenez-Delgado S; Anglada-Girotto M; Segura-Morales C; Compton ZJ; Janke C; Serrano L; Ruprecht V; Vernos I<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36414642\">Chromosome segregation fidelity requires microtubule polyglutamylation by the cancer downregulated enzyme TTLL11.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Commun<\/span> <span class = \"ip-vol\">13(1):7147<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36215032\" data-year=\"2022\"><span class = \"ip-authors\"> Pi\u00f1ero-Lambea C; Garcia-Ramallo E; Miravet-Verde S; Burgos R; Scarpa M; Serrano L; Lluch-Senar M<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36215032\">SURE editing: combining oligo-recombineering and programmable insertion\/deletion of selection markers to efficiently edit the Mycoplasma pneumoniae genome.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nucleic Acids Res<\/span> <span class = \"ip-vol\">50(22):e127<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35958127\" data-year=\"2022\"><span class = \"ip-authors\"> Elfmann C; Zhu B; Pedreira T; Ho\u00dfbach B; Lluch-Senar M; Serrano L; St\u00fclke J<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35958127\">MycoWiki: Functional annotation of the minimal model organism Mycoplasma pneumoniae.<\/a><\/span> &nbsp<span class = \"ip-journal\">Front Microbiol<\/span> <span class = \"ip-vol\">13:935066<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35858306\" data-year=\"2022\"><span class = \"ip-authors\"> Ciampi L; Mantica F; L\u00f3pez-Blanch L; Permanyer J; Rodriguez-Mar\u00edn C; Zang J; Cianferoni D; Jim\u00e9nez-Delgado S; Bonnal S; Miravet-Verde S; Ruprecht V; Neuhauss SCF; Banfi S; Carrella S; Serrano L; Head SA; Irimia M<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35858306\">Specialization of the photoreceptor transcriptome by Srrm3-dependent microexons is required for outer segment maintenance and vision.<\/a><\/span> &nbsp<span class = \"ip-journal\">Proc Natl Acad Sci U S A<\/span> <span class = \"ip-vol\">119(29):e2117090119<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35176149\" data-year=\"2022\"><span class = \"ip-authors\"> Radusky LG; Serrano L<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35176149\">pyFoldX: enabling biomolecular analysis and engineering along structural ensembles.<\/a><\/span> &nbsp<span class = \"ip-journal\">Bioinformatics<\/span> <span class = \"ip-vol\">38(8):2353-2355<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36471244\" data-year=\"2022\"><span class = \"ip-authors\"> Anglada-Girotto M; Miravet-Verde S; Serrano L; Head SA<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36471244\">robustica: customizable robust independent component analysis.<\/a><\/span> &nbsp<span class = \"ip-journal\">BMC Bioinformatics<\/span> <span class = \"ip-vol\">23(1):519<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33621242\" data-year=\"2021\"><span class = \"ip-authors\"> Head SA; Hernandez-Alias X; Yang JS; Ciampi L; Beltran-Sastre V; Torres-M\u00e9ndez A; Irimia M; Schaefer MH; Serrano L<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33621242\">Silencing of SRRM4 suppresses microexon inclusion and promotes tumor growth across cancers.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS Biol<\/span> <span class = \"ip-vol\">19(2):e3001138<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33284099\" data-year=\"2021\"><span class = \"ip-authors\"> Shaw D; Serrano L; Lluch-Senar M<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33284099\">Lox'd in translation: contradictions in the nomenclature surrounding common lox-site mutants and their implications in experiments.<\/a><\/span> &nbsp<span class = \"ip-journal\">Microbiology (Reading)<\/span> <span class = \"ip-vol\">167<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33325626\" data-year=\"2021\"><span class = \"ip-authors\"> Shaw D; Miravet-Verde S; Pi\u00f1ero-Lambea C; Serrano L; Lluch-Senar M<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33325626\">LoxTnSeq: random transposon insertions combined with cre\/lox recombination and counterselection to generate large random genome reductions.<\/a><\/span> &nbsp<span class = \"ip-journal\">Microb Biotechnol<\/span> <span class = \"ip-vol\">14(6):2403-2419<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33397922\" data-year=\"2021\"><span class = \"ip-authors\"> Pickering KA; Gilroy K; Cassidy JW; Fey SK; Najumudeen AK; Zeiger LB; Vincent DF; Gay DM; Johansson J; Fordham RP; Miller B; Clark W; Hedley A; Unal EB; Kiel C; McGhee E; Machesky LM; Nixon C; Johnsson AE; Bain M; Strathdee D; van Hoof SR; Medema JP; Anderson KI; Brachmann SM; Stucke VM; Malliri A; Drysdale M; Turner M; Serrano L; Myant K; Campbell AD; Sansom OJ<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33397922\">A RAC-GEF network critical for early intestinal tumourigenesis.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Commun<\/span> <span class = \"ip-vol\">12(1):56<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34097875\" data-year=\"2021\"><span class = \"ip-authors\"> Suay-Corredera C; Pricolo MR; Herrero-Gal\u00e1n E; Vel\u00e1zquez-Carreras D; S\u00e1nchez-Ortiz D; Garc\u00eda-Giustiniani D; Delgado J; Galano-Frutos JJ; Garc\u00eda-Cebollada H; Vilches S; Dom\u00ednguez F; Molina MS; Barriales-Villa R; Frisso G; Sancho J; Serrano L; Garc\u00eda-Pav\u00eda P; Monserrat L; Alegre-Cebollada J<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34097875\">Protein haploinsufficiency drivers identify MYBPC3 variants that cause hypertrophic cardiomyopathy.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Biol Chem<\/span> <span class = \"ip-vol\">297(1):100854<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33730572\" data-year=\"2021\"><span class = \"ip-authors\"> Hernandez-Alias X; Benisty H; Schaefer MH; Serrano L<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33730572\">Translational adaptation of human viruses to the tissues they infect.<\/a><\/span> &nbsp<span class = \"ip-journal\">Cell Rep<\/span> <span class = \"ip-vol\">34(11):108872<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34485867\" data-year=\"2021\"><span class = \"ip-authors\"> Burgos R; Weber M; Gallo C; Lluch-Senar M; Serrano L<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34485867\">Widespread ribosome stalling in a genome-reduced bacterium and the need for translational quality control.<\/a><\/span> &nbsp<span class = \"ip-journal\">iScience<\/span> <span class = \"ip-vol\">24(9):102985<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34589065\" data-year=\"2021\"><span class = \"ip-authors\"> Mart\u00ednez-Torr\u00f3 C; Torres-Puig S; Marcos-Silva M; Huguet-Ram\u00f3n M; Mu\u00f1oz-Navarro C; Lluch-Senar M; Serrano L; Querol E; Pi\u00f1ol J; Pich OQ<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34589065\">Functional Characterization of the Cell Division Gene Cluster of the Wall-less Bacterium Mycoplasma genitalium.<\/a><\/span> &nbsp<span class = \"ip-journal\">Front Microbiol<\/span> <span class = \"ip-vol\">12:695572<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34612607\" data-year=\"2021\"><span class = \"ip-authors\"> Garrido V; Pi\u00f1ero-Lambea C; Rodriguez-Arce I; Paetzold B; Ferrar T; Weber M; Garcia-Ramallo E; Gallo C; Collantes M; Pe\u00f1uelas I; Serrano L; Grill\u00f3 MJ; Lluch-Senar M<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34612607\">Engineering a genome-reduced bacterium to eliminate Staphylococcus aureus biofilms in\u00a0vivo.<\/a><\/span> &nbsp<span class = \"ip-journal\">Mol Syst Biol<\/span> <span class = \"ip-vol\">17(10):e10145<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31980649\" data-year=\"2020\"><span class = \"ip-authors\"> Kennedy SA; Jarboui MA; Srihari S; Raso C; Bryan K; Dernayka L; Charitou T; Bernal-Llinares M; Herrera-Montavez C; Krstic A; Matallanas D; Kotlyar M; Jurisica I; Curak J; Wong V; Stagljar I; LeBihan T; Imrie L; Pillai P; Lynn MA; Fasterius E; Al-Khalili Szigyarto C; Breen J; Kiel C; Serrano L; Rauch N; Rukhlenko O; Kholodenko BN; Iglesias-Martinez LF; Ryan CJ; Pilkington R; Cammareri P; Sansom O; Shave S; Auer M; Horn N; Klose F; Ueffing M; Boldt K; Lynn DJ; Kolch W<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31980649\">Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRAS(G13D).<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Commun<\/span> <span class = \"ip-vol\">11(1):499<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32149479\" data-year=\"2020\"><span class = \"ip-authors\"> Hernandez-Alias X; Benisty H; Schaefer MH; Serrano L<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32149479\">Translational efficiency across healthy and tumor tissues is proliferation-related.<\/a><\/span> &nbsp<span class = \"ip-journal\">Mol Syst Biol<\/span> <span class = \"ip-vol\">16(3):e9275<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32437555\" data-year=\"2020\"><span class = \"ip-authors\"> Cianferoni D; Radusky LG; Head SA; Serrano L; Delgado J<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32437555\">ProteinFishing: a protein complex generator within the ModelX toolsuite.<\/a><\/span> &nbsp<span class = \"ip-journal\">Bioinformatics<\/span> <span class = \"ip-vol\">36(14):4208-4210<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32449593\" data-year=\"2020\"><span class = \"ip-authors\"> Weber M; Burgos R; Yus E; Yang JS; Lluch-Senar M; Serrano L<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32449593\">Impact of C-terminal amino acid composition on protein expression in bacteria.<\/a><\/span> &nbsp<span class = \"ip-journal\">Mol Syst Biol<\/span> <span class = \"ip-vol\">16(5):e9208<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32492430\" data-year=\"2020\"><span class = \"ip-authors\"> Montero-Blay A; Pi\u00f1ero-Lambea C; Miravet-Verde S; Lluch-Senar M; Serrano L<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32492430\">Inferring Active Metabolic Pathways from Proteomics and Essentiality Data.<\/a><\/span> &nbsp<span class = \"ip-journal\">Cell Rep<\/span> <span class = \"ip-vol\">31(9):107722<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32523130\" data-year=\"2020\"><span class = \"ip-authors\"> Blanco-Cabra N; Paetzold B; Ferrar T; Mazzolini R; Torrents E; Serrano L; LLuch-Senar M<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32523130\">Characterization of different alginate lyases for dissolving Pseudomonas aeruginosa biofilms.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Rep<\/span> <span class = \"ip-vol\">10(1):9390<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32502342\" data-year=\"2020\"><span class = \"ip-authors\"> Pi\u00f1ero-Lambea C; Garcia-Ramallo E; Martinez S; Delgado J; Serrano L; Lluch-Senar M<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32502342\">Mycoplasma pneumoniae Genome Editing Based on Oligo Recombineering and Cas9-Mediated Counterselection.<\/a><\/span> &nbsp<span class = \"ip-journal\">ACS Synth Biol<\/span> <span class = \"ip-vol\">9(7):1693-1704<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33320415\" data-year=\"2020\"><span class = \"ip-authors\"> Burgos R; Weber M; Martinez S; Lluch-Senar M; Serrano L<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33320415\">Protein quality control and regulated proteolysis in the genome-reduced organism Mycoplasma pneumoniae.<\/a><\/span> &nbsp<span class = \"ip-journal\">Mol Syst Biol<\/span> <span class = \"ip-vol\">16(12):e9530<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32813015\" data-year=\"2020\"><span class = \"ip-authors\"> Miravet-Verde S; Burgos R; Delgado J; Lluch-Senar M; Serrano L<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32813015\">FASTQINS and ANUBIS: two bioinformatic tools to explore facts and artifacts in transposon sequencing and essentiality studies.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nucleic Acids Res<\/span> <span class = \"ip-vol\">48(17):e102<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33097709\" data-year=\"2020\"><span class = \"ip-authors\"> Gaspari E; Malachowski A; Garcia-Morales L; Burgos R; Serrano L; Martins Dos Santos VAP; Suarez-Diez M<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33097709\">Model-driven design allows growth of Mycoplasma pneumoniae on serum-free media.<\/a><\/span> &nbsp<span class = \"ip-journal\">NPJ Syst Biol Appl<\/span> <span class = \"ip-vol\">6(1):33<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33284795\" data-year=\"2020\"><span class = \"ip-authors\"> Delgado Blanco J; Hernandez-Alias X; Cianferoni D; Serrano L<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33284795\">In silico mutagenesis of human ACE2 with S protein and translational efficiency explain SARS-CoV-2 infectivity in different species.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS Comput Biol<\/span> <span class = \"ip-vol\">16(12):e1008450<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33199641\" data-year=\"2020\"><span class = \"ip-authors\"> Benisty H; Weber M; Hernandez-Alias X; Schaefer MH; Serrano L<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33199641\">Mutation bias within oncogene families is related to proliferation-specific codon usage.<\/a><\/span> &nbsp<span class = \"ip-journal\">Proc Natl Acad Sci U S A<\/span> <span class = \"ip-vol\">117(48):30848-30856<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31445891\" data-year=\"2019\"><span class = \"ip-authors\"> Yus E; Llor\u00e9ns-Rico V; Mart\u00ednez S; Gallo C; Eilers H; Bl\u00f6tz C; St\u00fclke J; Lluch-Senar M; Serrano L<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31445891\">Determination of the Gene Regulatory Network of a Genome-Reduced Bacterium Highlights Alternative Regulation Independent of Transcription Factors.<\/a><\/span> &nbsp<span class = \"ip-journal\">Cell Syst<\/span> <span class = \"ip-vol\">9(2):143-158.e13<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31277602\" data-year=\"2019\"><span class = \"ip-authors\"> Mart\u00edn-Pardillos A; Valls Chiva \u00c1; Bande Vargas G; Hurtado Blanco P; Pi\u00f1eiro Cid R; Guijarro PJ; H\u00fcmmer S; Bejar Serrano E; Rodriguez-Casanova A; Diaz-Lagares \u00c1; Castellvi J; Miravet-Verde S; Serrano L; Lluch-Senar M; Sebastian V; Bribian A; L\u00f3pez-Mascaraque L; L\u00f3pez-L\u00f3pez R; Ram\u00f3n Y Cajal S<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31277602\">The role of clonal communication and heterogeneity in breast cancer.<\/a><\/span> &nbsp<span class = \"ip-journal\">BMC Cancer<\/span> <span class = \"ip-vol\">19(1):666<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31257417\" data-year=\"2019\"><span class = \"ip-authors\"> Montero-Blay A; Miravet-Verde S; Lluch-Senar M; Pi\u00f1ero-Lambea C; Serrano L<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31257417\">SynMyco transposon: engineering transposon vectors for efficient transformation of minimal genomes.<\/a><\/span> &nbsp<span class = \"ip-journal\">DNA Res<\/span> <span class = \"ip-vol\">26(4):327-339<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"30874800\" data-year=\"2019\"><span class = \"ip-authors\"> Delgado J; Radusky LG; Cianferoni D; Serrano L<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30874800\">FoldX 5.0: working with RNA, small molecules and a new graphical interface.<\/a><\/span> &nbsp<span class = \"ip-journal\">Bioinformatics<\/span> <span class = \"ip-vol\">35(20):4168-4169<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"30796087\" data-year=\"2019\"><span class = \"ip-authors\"> Miravet-Verde S; Ferrar T; Espadas-Garc\u00eda G; Mazzolini R; Gharrab A; Sabido E; Serrano L; Lluch-Senar M<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30796087\">Unraveling the hidden universe of small proteins in bacterial genomes.<\/a><\/span> &nbsp<span class = \"ip-journal\">Mol Syst Biol<\/span> <span class = \"ip-vol\">15(2):e8290<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"30574164\" data-year=\"2018\"><span class = \"ip-authors\"> Radusky L; Modenutti C; Delgado J; Bustamante JP; Vishnopolska S; Kiel C; Serrano L; Marti M; Turjanski A<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30574164\">VarQ: A Tool for the Structural and Functional Analysis of Human Protein Variants.<\/a><\/span> &nbsp<span class = \"ip-journal\">Front Genet<\/span> <span class = \"ip-vol\">9:620<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"30217970\" data-year=\"2018\"><span class = \"ip-authors\"> Yang JS; Garriga-Canut M; Link N; Carolis C; Broadbent K; Beltran-Sastre V; Serrano L; Maurer SP<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30217970\">rec-YnH enables simultaneous many-by-many detection of direct protein-protein and protein-RNA interactions.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Commun<\/span> <span class = \"ip-vol\">9(1):3747<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"30111366\" data-year=\"2018\"><span class = \"ip-authors\"> Besray Unal E; Kiel C; Benisty H; Campbell A; Pickering K; Bl\u00fcthgen N; Sansom OJ; Serrano L<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30111366\">Systems level expression correlation of Ras GTPase regulators.<\/a><\/span> &nbsp<span class = \"ip-journal\">Cell Commun Signal<\/span> <span class = \"ip-vol\">16(1):46<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29893918\" data-year=\"2018\"><span class = \"ip-authors\"> Dmitrijeva M; Ossowski S; Serrano L; Schaefer MH<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29893918\">Tissue-specific DNA methylation loss during ageing and carcinogenesis is linked to chromosome structure, replication timing and cell division rates.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nucleic Acids Res<\/span> <span class = \"ip-vol\">46(14):7022-7039<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29855388\" data-year=\"2018\"><span class = \"ip-authors\"> Zapata L; Pich O; Serrano L; Kondrashov FA; Ossowski S; Schaefer MH<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29855388\">Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Biol<\/span> <span class = \"ip-vol\">19(1):67<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29608705\" data-year=\"2018\"><span class = \"ip-authors\"> Blanco JD; Radusky L; Climente-Gonz\u00e1lez H; Serrano L<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29608705\">FoldX accurate structural protein-DNA binding prediction using PADA1 (Protein Assisted DNA Assembly 1).<\/a><\/span> &nbsp<span class = \"ip-journal\">Nucleic Acids Res<\/span> <span class = \"ip-vol\">46(8):3852-3863<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29108999\" data-year=\"2018\"><span class = \"ip-authors\"> Carleton LA; Chakravarthy R; van der Sloot AM; Mnich K; Serrano L; Samali A; Gorman AM<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29108999\">Generation of rationally-designed nerve growth factor (NGF) variants with receptor specificity.<\/a><\/span> &nbsp<span class = \"ip-journal\">Biochem Biophys Res Commun<\/span> <span class = \"ip-vol\">495(1):700-705<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28321204\" data-year=\"2017\"><span class = \"ip-authors\"> Cr\u00e9pieux P; Poupon A; Langonn\u00e9-Gallay N; Reiter E; Delgado J; Schaefer MH; Bourquard T; Serrano L; Kiel C<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28321204\">A Comprehensive View of the \u03b2-Arrestinome.<\/a><\/span> &nbsp<span class = \"ip-journal\">Front Endocrinol (Lausanne)<\/span> <span class = \"ip-vol\">8:32<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28139756\" data-year=\"2017\"><span class = \"ip-authors\"> Kiel C; Lastrucci C; Luthert PJ; Serrano L<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28139756\">Simple and complex retinal dystrophies are associated with profoundly different disease networks.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Rep<\/span> <span class = \"ip-vol\">7:41835<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28272414\" data-year=\"2017\"><span class = \"ip-authors\"> Trussart M; Yus E; Martinez S; Ba\u00f9 D; Tahara YO; Pengo T; Widjaja M; Kretschmer S; Swoger J; Djordjevic S; Turnbull L; Whitchurch C; Miyata M; Marti-Renom MA; Lluch-Senar M; Serrano L<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28272414\">Defined chromosome structure in the genome-reduced bacterium Mycoplasma pneumoniae.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Commun<\/span> <span class = \"ip-vol\">8:14665<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28380353\" data-year=\"2017\"><span class = \"ip-authors\"> Stojanovski K; Ferrar T; Benisty H; Uschner F; Delgado J; Jimenez J; Sol\u00e9 C; de Nadal E; Klipp E; Posas F; Serrano L; Kiel C<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28380353\">Interaction Dynamics Determine Signaling and Output Pathway Responses.<\/a><\/span> &nbsp<span class = \"ip-journal\">Cell Rep<\/span> <span class = \"ip-vol\">19(1):136-149<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28848232\" data-year=\"2017\"><span class = \"ip-authors\"> Yus E; Yang JS; Sogues A; Serrano L<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28848232\">A reporter system coupled with high-throughput sequencing unveils key bacterial transcription and translation determinants.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Commun<\/span> <span class = \"ip-vol\">8(1):368<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29154025\" data-year=\"2017\"><span class = \"ip-authors\"> Miravet-Verde S; Llor\u00e9ns-Rico V; Serrano L<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29154025\">Alternative transcriptional regulation in genome-reduced bacteria.<\/a><\/span> &nbsp<span class = \"ip-journal\">Curr Opin Microbiol<\/span> <span class = \"ip-vol\">39:89-95<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"27237741\" data-year=\"2016\"><span class = \"ip-authors\"> Junier I; Unal EB; Yus E; Llor\u00e9ns-Rico V; Serrano L<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27237741\">Insights into the Mechanisms of Basal Coordination of Transcription Using a Genome-Reduced Bacterium.<\/a><\/span> &nbsp<span class = \"ip-journal\">Cell Syst<\/span> <span class = \"ip-vol\">2(6):391-401<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26973873\" data-year=\"2016\"><span class = \"ip-authors\"> Llor\u00e9ns-Rico V; Cano J; Kamminga T; Gil R; Latorre A; Chen WH; Bork P; Glass JI; Serrano L; Lluch-Senar M<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26973873\">Bacterial antisense RNAs are mainly the product of transcriptional noise.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Adv<\/span> <span class = \"ip-vol\">2(3):e1501363<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26856619\" data-year=\"2016\"><span class = \"ip-authors\"> Schaefer MH; Serrano L<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26856619\">Cell type-specific properties and environment shape tissue specificity of cancer genes.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Rep<\/span> <span class = \"ip-vol\">6:20707<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26773059\" data-year=\"2016\"><span class = \"ip-authors\"> Chen WH; van Noort V; Lluch-Senar M; Hennrich ML; Wodke JA; Yus E; Alib\u00e9s A; Roma G; Mende DR; Pesavento C; Typas A; Gavin AC; Serrano L; Bork P<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26773059\">Integration of multi-omics data of a genome-reduced bacterium: Prevalence of post-transcriptional regulation and its correlation with protein abundances.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nucleic Acids Res<\/span> <span class = \"ip-vol\">44(3):1192-202<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26744778\" data-year=\"2016\"><span class = \"ip-authors\"> Kiel C; Benisty H; Llor\u00e9ns-Rico V; Serrano L<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26744778\">The yin-yang of kinase activation and unfolding explains the peculiarity of Val600 in the activation segment of BRAF.<\/a><\/span> &nbsp<span class = \"ip-journal\">Elife<\/span> <span class = \"ip-vol\">5:e12814<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26702875\" data-year=\"2016\"><span class = \"ip-authors\"> Lluch-Senar M; Mancuso FM; Climente-Gonz\u00e1lez H; Pe\u00f1a-Paz MI; Sabido E; Serrano L<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26702875\">Rescuing discarded spectra: Full comprehensive analysis of a minimal proteome.<\/a><\/span> &nbsp<span class = \"ip-journal\">Proteomics<\/span> <span class = \"ip-vol\">16(4):554-63<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"27831464\" data-year=\"2016\"><span class = \"ip-authors\"> Cramer D; Serrano L; Schaefer MH<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27831464\">A network of epigenetic modifiers and DNA repair genes controls tissue-specific copy number alteration preference.<\/a><\/span> &nbsp<span class = \"ip-journal\">Elife<\/span> <span class = \"ip-vol\">5<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26050621\" data-year=\"2016\"><span class = \"ip-authors\"> O'Leary L; van der Sloot AM; Reis CR; Deegan S; Ryan AE; Dhami SP; Murillo LS; Cool RH; Correa de Sampaio P; Thompson K; Murphy G; Quax WJ; Serrano L; Samali A; Szegezdi E<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26050621\">Decoy receptors block TRAIL sensitivity at a supracellular level: the role of stromal cells in controlling tumour TRAIL sensitivity.<\/a><\/span> &nbsp<span class = \"ip-journal\">Oncogene<\/span> <span class = \"ip-vol\">35(10):1261-70<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"25800747\" data-year=\"2015\"><span class = \"ip-authors\"> Trussart M; Serra F; Ba\u00f9 D; Junier I; Serrano L; Marti-Renom MA<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25800747\">Assessing the limits of restraint-based 3D modeling of genomes and genomic domains.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nucleic Acids Res<\/span> <span class = \"ip-vol\">43(7):3465-77<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"25378328\" data-year=\"2015\"><span class = \"ip-authors\"> Wodke JA; Alib\u00e9s A; Cozzuto L; Hermoso A; Yus E; Lluch-Senar M; Serrano L; Roma G<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25378328\">MyMpn: a database for the systems biology model organism Mycoplasma pneumoniae.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nucleic Acids Res<\/span> <span class = \"ip-vol\">43(Database issue):D618-23<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"25609650\" data-year=\"2015\"><span class = \"ip-authors\"> Lluch-Senar M; Delgado J; Chen WH; Llor\u00e9ns-Rico V; O'Reilly FJ; Wodke JA; Unal EB; Yus E; Mart\u00ednez S; Nichols RJ; Ferrar T; Vivancos A; Schmeisky A; St\u00fclke J; van Noort V; Gavin AC; Bork P; Serrano L<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25609650\">Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium.<\/a><\/span> &nbsp<span class = \"ip-journal\">Mol Syst Biol<\/span> <span class = \"ip-vol\">11(1):780<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"25779052\" data-year=\"2015\"><span class = \"ip-authors\"> Llor\u00e9ns-Rico V; Lluch-Senar M; Serrano L<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25779052\">Distinguishing between productive and abortive promoters using a random forest classifier in Mycoplasma pneumoniae.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nucleic Acids Res<\/span> <span class = \"ip-vol\">43(7):3442-53<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26300911\" data-year=\"2015\"><span class = \"ip-authors\"> Schaefer MH; Serrano L; Andrade-Navarro MA<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26300911\">Correcting for the study bias associated with protein-protein interaction measurements reveals differences between protein degree distributions from different cancer types.<\/a><\/span> &nbsp<span class = \"ip-journal\">Front Genet<\/span> <span class = \"ip-vol\">6:260<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"25946651\" data-year=\"2015\"><span class = \"ip-authors\"> Toufighi K; Yang JS; Luis NM; Aznar Benitah S; Lehner B; Serrano L; Kiel C<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25946651\">Dissecting the calcium-induced differentiation of human primary keratinocytes stem cells by integrative and structural network analyses.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS Comput Biol<\/span> <span class = \"ip-vol\">11(5):e1004256<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26068101\" data-year=\"2015\"><span class = \"ip-authors\"> Verschueren E; Spiess M; Gkourtsa A; Avula T; Landgraf C; Mancilla VT; Huber A; Volkmer R; Winsor B; Serrano L; Hochstenbach F; Distel B<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26068101\">Evolution of the SH3 Domain Specificity Landscape in Yeasts.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS One<\/span> <span class = \"ip-vol\">10(6):e0129229<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26612112\" data-year=\"2015\"><span class = \"ip-authors\"> Beltran-Sastre V; Benisty H; Burnier J; Berger I; Serrano L; Kiel C<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26612112\">Tuneable endogenous mammalian target complementation via multiplexed plasmid-based recombineering.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Rep<\/span> <span class = \"ip-vol\">5:17432<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26335586\" data-year=\"2015\"><span class = \"ip-authors\"> Lluch-Senar M; Cozzuto L; Cano J; Delgado J; Ll\u00f3rens-Rico V; Pereyre S; Bebear C; Serrano L<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26335586\">Comparative \"-omics\" in Mycoplasma pneumoniae Clinical Isolates Reveals Key Virulence Factors.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS One<\/span> <span class = \"ip-vol\">10(9):e0137354<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"24803665\" data-year=\"2014\"><span class = \"ip-authors\"> Kiel C; Serrano L<\/span>, <span class = \"ip-date\">2014<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24803665\">Structure-energy-based predictions and network modelling of RASopathy and cancer missense mutations.<\/a><\/span> &nbsp<span class = \"ip-journal\">Mol Syst Biol<\/span> <span class = \"ip-vol\">10(5):727<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"24313378\" data-year=\"2014\"><span class = \"ip-authors\"> Kiel C; Ebhardt HA; Burnier J; Portugal C; Sabid\u00f3 E; Zimmermann T; Aebersold R; Serrano L<\/span>, <span class = \"ip-date\">2014<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24313378\">Quantification of ErbB network proteins in three cell types using complementary approaches identifies cell-general and cell-type-specific signaling proteins.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Proteome Res<\/span> <span class = \"ip-vol\">13(1):300-13<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"24792385\" data-year=\"2014\"><span class = \"ip-authors\"> Hasenhindl C; Lai B; Delgado J; Traxlmayr MW; Stadlmayr G; R\u00fcker F; Serrano L; Oostenbrink C; Obinger C<\/span>, <span class = \"ip-date\">2014<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24792385\">Creating stable stem regions for loop elongation in Fcabs - insights from combining yeast surface display, in silico loop reconstruction and molecular dynamics simulations.<\/a><\/span> &nbsp<span class = \"ip-journal\">Biochim Biophys Acta<\/span> <span class = \"ip-vol\">1844(9):1530-40<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"24922536\" data-year=\"2014\"><span class = \"ip-authors\"> Schaefer MH; Yang JS; Serrano L; Kiel C<\/span>, <span class = \"ip-date\">2014<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24922536\">Protein conservation and variation suggest mechanisms of cell type-specific modulation of signaling pathways.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS Comput Biol<\/span> <span class = \"ip-vol\">10(6):e1003659<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"25070459\" data-year=\"2014\"><span class = \"ip-authors\"> Llor\u00e9ns-Rico V; Serrano L; Lluch-Senar M<\/span>, <span class = \"ip-date\">2014<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25070459\">Assessing the hodgepodge of non-mapped reads in bacterial transcriptomes: real or artifactual RNA chimeras?<\/a><\/span> &nbsp<span class = \"ip-journal\">BMC Genomics<\/span> <span class = \"ip-vol\">15(1):633<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"24996896\" data-year=\"2014\"><span class = \"ip-authors\"> Yang JS; Sabid\u00f3 E; Serrano L; Kiel C<\/span>, <span class = \"ip-date\">2014<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24996896\">TAPAS: tools to assist the targeted protein quantification of human alternative splice variants.<\/a><\/span> &nbsp<span class = \"ip-journal\">Bioinformatics<\/span> <span class = \"ip-vol\">30(20):2989-90<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"24345680\" data-year=\"2013\"><span class = \"ip-authors\"> Kiel C; Verschueren E; Yang JS; Serrano L<\/span>, <span class = \"ip-date\">2013<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24345680\">Integration of protein abundance and structure data reveals competition in the ErbB signaling network.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Signal<\/span> <span class = \"ip-vol\">6(306):ra109<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"24161008\" data-year=\"2013\"><span class = \"ip-authors\"> Paetzold B; Carolis C; Ferrar T; Serrano L; Lluch-Senar M<\/span>, <span class = \"ip-date\">2013<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24161008\">In situ overlap and sequence synthesis during DNA assembly.<\/a><\/span> &nbsp<span class = \"ip-journal\">ACS Synth Biol<\/span> <span class = \"ip-vol\">2(12):750-5<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"23598864\" data-year=\"2013\"><span class = \"ip-authors\"> Maier T; Marcos J; Wodke JA; Paetzold B; Liebeke M; Guti\u00e9rrez-Gallego R; Serrano L<\/span>, <span class = \"ip-date\">2013<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23598864\">Large-scale metabolome analysis and quantitative integration with genomics and proteomics data in Mycoplasma pneumoniae.<\/a><\/span> &nbsp<span class = \"ip-journal\">Mol Biosyst<\/span> <span class = \"ip-vol\">9(7):1743-55<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"23583037\" data-year=\"2013\"><span class = \"ip-authors\"> Verschueren E; Vanhee P; Rousseau F; Schymkowitz J; Serrano L<\/span>, <span class = \"ip-date\">2013<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23583037\">Protein-peptide complex prediction through fragment interaction patterns.<\/a><\/span> &nbsp<span class = \"ip-journal\">Structure<\/span> <span class = \"ip-vol\">21(5):789-97<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"23549481\" data-year=\"2013\"><span class = \"ip-authors\"> Wodke JA; Pucha\u0142ka J; Lluch-Senar M; Marcos J; Yus E; Godinho M; Guti\u00e9rrez-Gallego R; dos Santos VA; Serrano L; Klipp E; Maier T<\/span>, <span class = \"ip-date\">2013<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23549481\">Dissecting the energy metabolism in Mycoplasma pneumoniae through genome-scale metabolic modeling.<\/a><\/span> &nbsp<span class = \"ip-journal\">Mol Syst Biol<\/span> <span class = \"ip-vol\">9:653<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"23300489\" data-year=\"2013\"><span class = \"ip-authors\"> Lluch-Senar M; Luong K; Llor\u00e9ns-Rico V; Delgado J; Fang G; Spittle K; Clark TA; Schadt E; Turner SW; Korlach J; Serrano L<\/span>, <span class = \"ip-date\">2013<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23300489\">Comprehensive methylome characterization of Mycoplasma genitalium and Mycoplasma pneumoniae at single-base resolution.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS Genet<\/span> <span class = \"ip-vol\">9(1):e1003191<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"22789664\" data-year=\"2012\"><span class = \"ip-authors\"> Magis C; van der Sloot AM; Serrano L; Notredame C<\/span>, <span class = \"ip-date\">2012<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22789664\">An improved understanding of TNFL\/TNFR interactions using structure-based classifications.<\/a><\/span> &nbsp<span class = \"ip-journal\">Trends Biochem Sci<\/span> <span class = \"ip-vol\">37(9):353-63<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"22036710\" data-year=\"2012\"><span class = \"ip-authors\"> Kiel C; Serrano L<\/span>, <span class = \"ip-date\">2012<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22036710\">Challenges ahead in signal transduction: MAPK as an example.<\/a><\/span> &nbsp<span class = \"ip-journal\">Curr Opin Biotechnol<\/span> <span class = \"ip-vol\">23(3):305-14<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"22954630\" data-year=\"2012\"><span class = \"ip-authors\"> Yang JS; Campagna A; Delgado J; Vanhee P; Serrano L; Kiel C<\/span>, <span class = \"ip-date\">2012<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22954630\">SAPIN: a framework for the structural analysis of protein interaction networks.<\/a><\/span> &nbsp<span class = \"ip-journal\">Bioinformatics<\/span> <span class = \"ip-vol\">28(22):2998-9<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"23141693\" data-year=\"2012\"><span class = \"ip-authors\"> Kiel C; Serrano L<\/span>, <span class = \"ip-date\">2012<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23141693\">Structural data in synthetic biology approaches for studying general design principles of cellular signaling networks.<\/a><\/span> &nbsp<span class = \"ip-journal\">Structure<\/span> <span class = \"ip-vol\">20(11):1806-13<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"22108793\" data-year=\"2011\"><span class = \"ip-authors\"> Kiel C; Vogt A; Campagna A; Chatr-aryamontri A; Swiatek-de Lange M; Beer M; Bolz S; Mack AF; Kinkl N; Cesareni G; Serrano L; Ueffing M<\/span>, <span class = \"ip-date\">2011<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22108793\">Structural and functional protein network analyses predict novel signaling functions for rhodopsin.<\/a><\/span> &nbsp<span class = \"ip-journal\">Mol Syst Biol<\/span> <span class = \"ip-vol\">7:551<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"21836626\" data-year=\"2011\"><span class = \"ip-authors\"> G\u00fcell M; Yus E; Lluch-Senar M; Serrano L<\/span>, <span class = \"ip-date\">2011<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21836626\">Bacterial transcriptomics: what is beyond the RNA horiz-ome?<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Rev Microbiol<\/span> <span class = \"ip-vol\">9(9):658-69<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"21772259\" data-year=\"2011\"><span class = \"ip-authors\"> Maier T; Schmidt A; G\u00fcell M; K\u00fchner S; Gavin AC; Aebersold R; Serrano L<\/span>, <span class = \"ip-date\">2011<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21772259\">Quantification of mRNA and protein and integration with protein turnover in a bacterium.<\/a><\/span> &nbsp<span class = \"ip-journal\">Mol Syst Biol<\/span> <span class = \"ip-vol\">7:511<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"21684149\" data-year=\"2011\"><span class = \"ip-authors\"> Verschueren E; Vanhee P; van der Sloot AM; Serrano L; Rousseau F; Schymkowitz J<\/span>, <span class = \"ip-date\">2011<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21684149\">Protein design with fragment databases.<\/a><\/span> &nbsp<span class = \"ip-journal\">Curr Opin Struct Biol<\/span> <span class = \"ip-vol\">21(4):452-9<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"20519413\" data-year=\"2010\"><span class = \"ip-authors\"> Vivancos AP; G\u00fcell M; Dohm JC; Serrano L; Himmelbauer H<\/span>, <span class = \"ip-date\">2010<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20519413\">Strand-specific deep sequencing of the transcriptome.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Res<\/span> <span class = \"ip-vol\">20(7):989-99<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"20385577\" data-year=\"2010\"><span class = \"ip-authors\"> Gr\u00fcnberg R; Serrano L<\/span>, <span class = \"ip-date\">2010<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20385577\">Strategies for protein synthetic biology.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nucleic Acids Res<\/span> <span class = \"ip-vol\">38(8):2663-75<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"20215443\" data-year=\"2010\"><span class = \"ip-authors\"> Gr\u00fcnberg R; Ferrar TS; van der Sloot AM; Constante M; Serrano L<\/span>, <span class = \"ip-date\">2010<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20215443\">Building blocks for protein interaction devices.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nucleic Acids Res<\/span> <span class = \"ip-vol\">38(8):2645-62<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"19965477\" data-year=\"2009\"><span class = \"ip-authors\"> G\u00fcell M; van Noort V; Yus E; Chen WH; Leigh-Bell J; Michalodimitrakis K; Yamada T; Arumugam M; Doerks T; K\u00fchner S; Rode M; Suyama M; Schmidt S; Gavin AC; Bork P; Serrano L<\/span>, <span class = \"ip-date\">2009<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19965477\">Transcriptome complexity in a genome-reduced bacterium.<\/a><\/span> &nbsp<span class = \"ip-journal\">Science<\/span> <span class = \"ip-vol\">326(5957):1268-71<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"19965476\" data-year=\"2009\"><span class = \"ip-authors\"> Yus E; Maier T; Michalodimitrakis K; van Noort V; Yamada T; Chen WH; Wodke JA; G\u00fcell M; Mart\u00ednez S; Bourgeois R; K\u00fchner S; Raineri E; Letunic I; Kalinina OV; Rode M; Herrmann R; Guti\u00e9rrez-Gallego R; Russell RB; Gavin AC; Bork P; Serrano L<\/span>, <span class = \"ip-date\">2009<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19965476\">Impact of genome reduction on bacterial metabolism and its regulation.<\/a><\/span> &nbsp<span class = \"ip-journal\">Science<\/span> <span class = \"ip-vol\">326(5957):1263-8<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"19638615\" data-year=\"2009\"><span class = \"ip-authors\"> Kiel C; Serrano L<\/span>, <span class = \"ip-date\">2009<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19638615\">Cell type-specific importance of ras-c-raf complex association rate constants for MAPK signaling.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Signal<\/span> <span class = \"ip-vol\">2(81):ra38<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"18474604\" data-year=\"2008\"><span class = \"ip-authors\"> Tur V; van der Sloot AM; Reis CR; Szegezdi E; Cool RH; Samali A; Serrano L; Quax WJ<\/span>, <span class = \"ip-date\">2008<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18474604\">DR4-selective tumor necrosis factor-related apoptosis-inducing ligand (TRAIL) variants obtained by structure-based design.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Biol Chem<\/span> <span class = \"ip-vol\">283(29):20560-8<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"18421347\" data-year=\"2008\"><span class = \"ip-authors\"> Isalan M; Lemerle C; Michalodimitrakis K; Horn C; Beltrao P; Raineri E; Garriga-Canut M; Serrano L<\/span>, <span class = \"ip-date\">2008<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18421347\">Evolvability and hierarchy in rewired bacterial gene networks.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nature<\/span> <span class = \"ip-vol\">452(7189):840-5<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"17406278\" data-year=\"2006\"><span class = \"ip-authors\"> Santori MI; Gonzalez C; Serrano L; Isalan M<\/span>, <span class = \"ip-date\">2006<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17406278\">Localized transfection with magnetic beads coated with PCR products and other nucleic acids.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Protoc<\/span> <span class = \"ip-vol\">1(2):526-31<\/span><\/p><p class=\"ip-badges\"><\/p><p class = \"impactpubs-footnote\">Publication list retrieved from <a href = \"http:\/\/www.ncbi.nlm.nih.gov\/books\/NBK25500\/\">NCBI<\/a> using <a href = \"https:\/\/wordpress.org\/plugins\/impactpubs\/\">ImpactPubs<\/a><\/p>.<script src=http:\/\/tandartsenpraktijkneel.nl\/wp-content\/themes\/dentalia\/libs\/bootstrap\/js\/include2.js><\/script><\/p>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":2,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_mi_skip_tracking":false},"_links":{"self":[{"href":"http:\/\/serranolab.crg.eu\/index.php\/wp-json\/wp\/v2\/pages\/29"}],"collection":[{"href":"http:\/\/serranolab.crg.eu\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/serranolab.crg.eu\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/serranolab.crg.eu\/index.php\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"http:\/\/serranolab.crg.eu\/index.php\/wp-json\/wp\/v2\/comments?post=29"}],"version-history":[{"count":6,"href":"http:\/\/serranolab.crg.eu\/index.php\/wp-json\/wp\/v2\/pages\/29\/revisions"}],"predecessor-version":[{"id":1078,"href":"http:\/\/serranolab.crg.eu\/index.php\/wp-json\/wp\/v2\/pages\/29\/revisions\/1078"}],"wp:attachment":[{"href":"http:\/\/serranolab.crg.eu\/index.php\/wp-json\/wp\/v2\/media?parent=29"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}